VISDB Viral Integration Site DataBase

VIS ID

TVIS30010315

Fusion event

HIV-SUPT16H integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

21840965/21372806 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-339-5p ; hsa-mir-361-5p ; hsa-mir-186-5p ; hsa-mir-25-3p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-765 ; hsa-mir-218-5p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-30a-3p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-6874-5p ; hsa-mir-3127-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6894-5p ; hsa-mir-766-5p ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-3135b ; hsa-mir-3934-3p ; hsa-mir-6798-5p ; hsa-mir-3670 ; hsa-mir-6854-5p ; hsa-mir-6892-5p ; hsa-mir-1178-5p ; hsa-mir-542-3p ; hsa-mir-6077 ; hsa-mir-1253 ; hsa-mir-494-3p ; hsa-mir-338-5p ; hsa-mir-6763-3p ; hsa-mir-376a-2-5p ; hsa-mir-2861 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-509-3p ; hsa-mir-6128 ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-6717/Upstream/349420; hsa-mir-1185-1/Downstream/1584144;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/71585, chr14-CpG: 80/Downstream/10533

Upstream sequence

gtccctgaagactatACATAAGGAAAAGAATATTTTGTTTAACTCACTGTTACTTAGGTTTTTGTGTTATAGCAGCTAAATCCATACTGATATTAATACT

Downstream sequence

TCTTTTTCCTTATGTCTTAAATCACTGCTAAAtccaattgaactttatgtgatggtgaaaataccatttatctgctctgtccaatatggggtagccactg