Basic Information
VIS ID
TVIS30010318
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
35788115/35318909 (Hg38)
End
35788115/35318909 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/4304167; hsa-mir-1185-1/Downstream/1633400;
Nearest TSS
ENST00000550708/Upstream/6166; ENST00000307169/Downstream/44719;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/26261, chr14-CpG: 111/Downstream/84932
Nearby gene
PSMA6(No orient, 1430)
Upstream sequence
tttaggaacgttcatactgttttccataatggctgtactcatgtacatttcccttaattgtaagggttcccttttctctgcatcctcaacacttcttatg
Downstream sequence
ttttgtctttttgataatagttattctaactagtgaggtgatgtctcattgtggtttGCCTCCAATTTTAAGTATTAAGCCTTTGGTATATGCAGACAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate