Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene36014530355383523580930435776441
Basic Information
VIS ID
TVIS30010319
Fusion event
HIV-RALGAPA1P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
36245647/35776441 (Hg38)
End
36245647/35776441 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
RALGAPA1P1
Nearest miRNA
hsa-mir-208a/Upstream/4761699; hsa-mir-1185-1/Downstream/1175868;
Nearest TSS
ENST00000550708/Upstream/15547; ENST00000547420/Downstream/32394;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/240634, chr14-CpG: 62/Downstream/32131
Upstream sequence
ctgcactctagcctgggaagacagagtgagactccaccttggggaaaaaaaaaaaaaagaagaaTTTATAATGTCTGAAATATATTTATTCTGTAAATAG
Downstream sequence
GTACCTAACAATAGGCTTTGTAAATAGGTACTTAGGGATTAAAAAGCTCAAACACAGACAGTACTGCTCTAAAGAAACTGTCAGTAAGAGCAGGGCATGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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