Basic Information
VIS ID
TVIS30010321
Fusion event
HIV-LOC105370481 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
47103547/46634344 (Hg38)
End
47103547/46634344 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370481
Nearest miRNA
hsa-mir-208a/Upstream/9681953; hsa-mir-1185-1/Downstream/1126651;
Nearest TSS
ENST00000550708/Upstream/162983; ENST00000557531/Downstream/17477;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1380745, chr14-CpG: 30/Downstream/17321
Nearby gene
RPL10L(No orient, 16673)
Upstream sequence
ttgctctttcatatggtttttcatgtctcaatttcattcattttagctcggatttttgttatttcttttcttctgctagccttggatttggttggctctt
Downstream sequence
gttattctatttcctctatgtgtgaaattaggttgttaatttggtatctcacttttttatgtaggtgttagtactacaaactctcctgttaacactgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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