Basic Information
VIS ID
TVIS30010327
Fusion event
HIV-SIPA1L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
71819126/71352409 (Hg38)
End
71819126/71352409 (Hg38)
Orient
-
Location type
Intronic
Target gene
SIPA1L1
miRNAs that regulate target gene
hsa-mir-92a-3p ; hsa-mir-4531 ; hsa-mir-5581-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-539-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-208a/Upstream/3910479; hsa-mir-1185-1/Downstream/1164411;
Nearest TSS
ENST00000550708/Upstream/30595; ENST00000557469/Downstream/61545;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/30901, chr14-CpG: 114/Downstream/579538
Nearby gene
SNORD56B(No orient, 45928)
Upstream sequence
gggaGGGTtgaatttctgcgaagtgaatacacttgtgtaatcagcactcaaattaagaaacagaattttaactgccccttaggaggtctggttacccccc
Downstream sequence
ctcctagttgaagccttgcttcctgaggactcacaccataggttactgttgctggtttgtgagctttatattaatgtcataatgtataatatattctttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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