VISDB Viral Integration Site DataBase

VIS ID

TVIS30010330

Fusion event

HIV-DNAL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q24.3

Reference genome

Start

End

74163571/73696868 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-548at-5p ; hsa-mir-550b-2-5p ; hsa-mir-7847-3p ; hsa-mir-1227-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-5186 ; hsa-mir-6516-5p ; hsa-mir-1273e ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-139-3p ; hsa-mir-6499-3p ; hsa-mir-298 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-219b-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-34b-3p ; hsa-mir-4500 ; hsa-let-7c-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-mir-154-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-548av-3p ; hsa-mir-8064 ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-6767-3p ; hsa-mir-5011-3p ; hsa-mir-5579-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-4417 ; hsa-mir-6721-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6089 ; hsa-mir-383-3p ; hsa-mir-299-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-194-5p ; hsa-mir-3135a ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-6514-3p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-4425 ; hsa-mir-4703-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-4259 ; hsa-mir-4715-5p ; hsa-mir-1244 ; hsa-mir-580-5p ; hsa-mir-6728-5p ; hsa-mir-5187-5p ; hsa-mir-6744-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4707-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-602 ; hsa-mir-6134 ; hsa-mir-1289 ; hsa-mir-3198 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4802-5p ; hsa-mir-5583-3p ; hsa-mir-6514-5p ; hsa-mir-8076

Nearest miRNA

hsa-mir-208a/Upstream/1179970; hsa-mir-1185-1/Downstream/61879;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/51805, chr14-CpG: 106/Downstream/16947

Upstream sequence

CCTAGACTAAATGCTGGCCATTGATGTATGTCAAAATTTACCCTAATTATTTGGTCTGGTGACCCTCATTGTTGGGAAAAGTGACTACCATGGTTATAAG

Downstream sequence

TAAGGGTATAATGAAACTTAGTATTTCAAAATATATTTTTTGAGAAGTTCTAAGTTAAACAGCTCTTAAAATGTATTATGTACGTGGTTGTGGAGGGAAG