Basic Information
VIS ID
TVIS30010335
Fusion event
HIV-GOLGA5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
93290612/92824267 (Hg38)
End
93290612/92824267 (Hg38)
Orient
-
Location type
Intronic
Target gene
GOLGA5
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-142-3p ; hsa-mir-1296-5p ; hsa-mir-6502-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4684-5p ; hsa-mir-7107-3p ; hsa-mir-6753-3p ; hsa-mir-6503-5p ; hsa-mir-4527 ; hsa-mir-7854-3p ; hsa-mir-4257 ; hsa-mir-5683 ; hsa-mir-4797-5p
Nearest miRNA
hsa-mir-1260a/Upstream/15557977; hsa-mir-1185-1/Downstream/1123959;
Nearest TSS
ENST00000550708/Upstream/14883; ENST00000554700/Downstream/8859;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/29688, chr14-CpG: 75/Downstream/98633
Upstream sequence
TATCATATATTTTATGAATATTTTTTCCAGTTGTCATATTAATGCTATATAACTGAGATTCTTGAAGAGATTATCCATTCTTCCTCATTACAAGATAAAC
Downstream sequence
ATTTTTTGTTTCTGATTATTTACACTGTTAATAATTATTTATTATGGATCTTTGTTTACAATACATACTGAAGTGCCAGCTTTTCATCAGACCCATCTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate