Basic Information
VIS ID
TVIS30010346
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22418940/22130989 (Hg38)
End
22418940/22130989 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3118-2/Upstream/179666; hsa-mir-10393/Downstream/94289;
Nearest TSS
ENST00000557528/Upstream/36467; ENST00000622895/Downstream/17237;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/240994, chr15-CpG: 215/Downstream/126345
Nearby gene
OR4N3P(No orient, 4545)
Upstream sequence
tttgttggaagtttttatgatgaaggatgttgaattttgtcaatgccttttctgcatctattgaggtaaccatatggtttttgcctttcattctgccaat
Downstream sequence
gtggtatatcacatttattgatttgcatatgttcaaatatcactgtgcttgctaaccatgaattatccttttaatgtgctgccagatttaatgtgttagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate