Basic Information
VIS ID
TVIS30010351
Fusion event
HIV-GPR176 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
40152213/39860012 (Hg38)
End
40152213/39860012 (Hg38)
Orient
+
Location type
Intronic
Target gene
GPR176
miRNAs that regulate target gene
hsa-mir-599 ; hsa-mir-2054 ; hsa-mir-3161 ; hsa-mir-6826-3p ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-4780 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-3938 ; hsa-mir-580-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-382-5p
Nearest miRNA
hsa-mir-1233-1/Upstream/2887111; hsa-mir-10393/Downstream/1831573;
Nearest TSS
ENST00000557528/Upstream/30736; ENST00000499797/Downstream/34515;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/77025, chr15-CpG: 152/Downstream/59748
Upstream sequence
ctgaactacatacttaaaaatggttaagatggtaaatatgtggcatgtgttttttttgccacaataaaaaaGGCTTAAATCAAAAAAAAAAAAGCCATTG
Downstream sequence
TTACTTCTTCAAATTACAGAAATTATTCAAACTCAACATATAGGCCACTTGTATTAATTCCTTGGCCCTCAGATTTCAAGGTGATAATCTACTGAAAACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate