Fusion event
HIV-VPS13C integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
62211823/61919624 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10393/Upstream/2748362; hsa-mir-11181/Downstream/385034;
Upstream sequence
CAAAATAATGAAGAGTATTTTTCCTCATCACTAGAAATGATCACCACAAATTGCTTTTCTAAGACATAAACTTAAAAAGAAGACCAGTTACTGTTATAAA
Downstream sequence
ATTTTTGGCTGAAAACAGTTTTGCTTGGGGTTTTGAATATAAAAACAAAATCCAACTTATTTCTTATTCTCTCAATCATATAGCAACAATCTTTTTCTTT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.