Basic Information
VIS ID
TVIS30010365
Fusion event
HIV-PARP6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
72544685/72252344 (Hg38)
End
72544685/72252344 (Hg38)
Orient
-
Location type
Intronic
Target gene
PARP6
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-769-5p
Nearest miRNA
hsa-mir-10393/Upstream/2172876; hsa-mir-11181/Downstream/334873;
Nearest TSS
ENST00000557528/Upstream/993; ENST00000570175/Downstream/2137;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/20447, chr15-CpG: 75/Downstream/19757
Upstream sequence
GATGCAAAGAAAACTTAGTTGAAATTAACAGTGTTAATTTCTACATGCAAAGGACACaaaaacctattggtggtgactatagttagtaacaatgtgtaat
Downstream sequence
attcttcaaaatcactgtggtagattttaagtgttctcgccacaaaaaatacatacgcgagataatgcatatgcttattagctctactgaaccattctgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate