Basic Information
VIS ID
TVIS30010367
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
74270441/73978100 (Hg38)
End
74270441/73978100 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/678121; hsa-mir-11181/Downstream/433257;
Nearest TSS
ENST00000557528/Upstream/30272; ENST00000564725/Downstream/8400;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/50068, chr15-CpG: 65/Downstream/13811
Nearby gene
STOML1(No orient, 5118)
Upstream sequence
ataacagtttgtagaaaaggagacacatggctcttaaacatattagaagatgctcaacctcactcaaaataacacaaaagcaaatgaaaaggtttctagg
Downstream sequence
taattcaatggggaaaagatacctttaaacaaaaagtgctggaacgattggatatcaccatgaaaaaaaagaacgtcaacttttacttcacaccatatac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate