Basic Information
VIS ID
TVIS30010370
Fusion event
HIV-ZFAND6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
80404279/80111937 (Hg38)
End
80404279/80111937 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZFAND6
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-580-5p ; hsa-mir-4262 ; hsa-mir-935 ; hsa-mir-4662a-3p
Nearest miRNA
hsa-mir-10393/Upstream/902066; hsa-mir-11181/Downstream/469166;
Nearest TSS
ENST00000557528/Upstream/36746; ENST00000561017/Downstream/9782;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/51629, chr15-CpG: 58/Downstream/40478
Upstream sequence
GAAGGTGGTCTTGaatcggagagtacaggctctgcctaatagggccttagctgatgggttttaatttggggaacatgagtccagtattgtcagatcttcc
Downstream sequence
tatttttcaacagaagaaatctggaAAAAACTGCTGTATAggccaggcatggtgactcacacctgtaatctcagcacttagggaggccgagggaggtgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate