Basic Information
VIS ID
TVIS30010371
Fusion event
HIV-BTBD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
83719377/83050625 (Hg38)
End
83719377/83050625 (Hg38)
Orient
-
Location type
Intronic
Target gene
BTBD1
miRNAs that regulate target gene
hsa-let-7a-5p ; hsa-mir-155-5p ; hsa-mir-4482-3p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-4795-3p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-4755-3p ; hsa-mir-4795-5p ; hsa-mir-126-5p ; hsa-mir-6783-5p ; hsa-mir-137 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-mir-10393/Upstream/2053152; hsa-mir-11181/Downstream/16710;
Nearest TSS
ENST00000557528/Upstream/8804; ENST00000564988/Downstream/5854;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/38845, chr15-CpG: 97/Downstream/15863
Upstream sequence
aggcttacattattatcccattttcagaggtttggagaggtacagtgacttgcctaagatcatctagttaagtatgttgcacagctagtacttaaatcTT
Downstream sequence
ATAGTCTTTTCACTAATTATAATATCAATTGTCAAGCACAACAGTGCAAATATCAGATTTTCTCTTCCATTGCCTGTTTTGATTTTGAGGAGAGAATAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate