Basic Information
VIS ID
TVIS30010372
Fusion event
HIV-LOC105370955 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87721199/87177968 (Hg38)
End
87721199/87177968 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370955
Nearest miRNA
hsa-mir-10393/Upstream/1352238; hsa-mir-11181/Downstream/768238;
Nearest TSS
ENST00000557528/Upstream/135914; ENST00000560153/Downstream/398961;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1337084, chr15-CpG: 36/Downstream/1077455
Nearby gene
AGBL1(No orient, 148916)
Upstream sequence
ATGTATTAAAAACCTGGAGCTTTTGTGAGAGAAGAGAAAAAGGTGAGGGAAAAAAGGGGTCACTTGGGAGTGAGAACATGCCTGGAAAACCCACCTTTAA
Downstream sequence
ATCCCTCAGAAATGCAtgaattagtaaaagaaggtacaattatcactgacattttacatgtgagaaaaagaatggaagttggagcagctaaatgtcttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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