VISDB Viral Integration Site DataBase

VIS ID

TVIS30010380

Fusion event

HIV-CHSY1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q26.3

Reference genome

Start

End

101769174/101228969 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-375 ; hsa-mir-9-5p ; hsa-mir-221-3p ; hsa-mir-6807-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-655-5p ; hsa-mir-4795-5p ; hsa-mir-7113-5p ; hsa-mir-9500 ; hsa-mir-6753-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-7641 ; hsa-mir-4477a ; hsa-mir-570-3p ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-3200-5p ; hsa-mir-5582-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-506-3p ; hsa-mir-5096 ; hsa-mir-7150 ; hsa-mir-197-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-5093 ; hsa-mir-1207-5p ; hsa-mir-657 ; hsa-mir-5197-5p ; hsa-mir-651-3p

Nearest miRNA

hsa-mir-10393/Upstream/2444467; hsa-mir-1302-10/Downstream/731490;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/139716, chr15-CpG: 218/Downstream/21977

Upstream sequence

tttaaaagataagtacataaagcaattattataaatctctgttgactggcatacaacgtataaagatataatttatttgacaacaacagcacaaagggag

Downstream sequence

gagacaacacagctacacatgagcaaatcttgtgtttactactgttattaagttggtattcatcagaactaaattatcaggtaagatgttcatccccaag