Basic Information
VIS ID
TVIS30010383
Fusion event
HIV-LUC7L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
274228/224229 (Hg38)
End
274228/224229 (Hg38)
Orient
-
Location type
Intronic
Target gene
LUC7L
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-3685 ; hsa-mir-155-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-4711-5p ; hsa-mir-107 ; hsa-mir-1827 ; hsa-mir-103a-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-10b-3p ; hsa-mir-4695-5p ; hsa-mir-122-5p ; hsa-mir-129-5p ; hsa-mir-3135b ; hsa-mir-3160-5p ; hsa-mir-3652 ; hsa-mir-3655 ; hsa-mir-4430 ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-5698 ; hsa-mir-578 ; hsa-mir-6879-3p ; hsa-mir-8055
Nearest miRNA
hsa-mir-6859-4/Upstream/207110; hsa-mir-11401/Downstream/311087;
Nearest TSS
ENST00000527434/Upstream/14456; ENST00000426695/Downstream/3385;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/36945, chr16-CpG: 82/Downstream/4610
Upstream sequence
GAAGCAGACCCTAAAACCTGAAGTACAACAAAGTATGAAGTACAAATTGATTTCCATTATAAAAAACTCAACTGTCAAGAAAGATATGACATTAGAAAAC
Downstream sequence
CTCATGAggccgagcgcggtggctcatgcctataatcccagcactttgggaggccgaggagggcggatcaccttaggtcagaagttcgtgaccagcctgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate