VISDB Viral Integration Site DataBase

VIS ID

TVIS30010398

Fusion event

HIV-RNPS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

2309964/2259963 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1296-5p ; hsa-mir-342-5p ; hsa-mir-30b-3p ; hsa-mir-615-3p ; hsa-mir-378a-3p ; hsa-mir-106b-5p ; hsa-mir-149-5p ; hsa-mir-30c-5p ; hsa-mir-92a-3p ; hsa-mir-3163 ; hsa-mir-218-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6729-5p ; hsa-mir-6881-5p ; hsa-mir-4649-5p ; hsa-mir-5589-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-6776-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-1283 ; hsa-mir-888-5p ; hsa-mir-548m ; hsa-mir-5582-3p ; hsa-mir-3662 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-539-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1278 ; hsa-mir-888-3p ; hsa-mir-590-3p ; hsa-mir-4311 ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-1262 ; hsa-mir-1324 ; hsa-mir-424-5p ; hsa-mir-4701-3p ; hsa-mir-497-5p ; hsa-mir-6736-5p ; hsa-mir-6838-5p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-1225/Upstream/123834; hsa-mir-11401/Downstream/10750;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/7995, chr16-CpG: 182/Downstream/7481

Upstream sequence

gggcgacagagcgagactccgtctcaaaaaaaagaaaggtaaagcgttcattaatatcaagcagggcagaaattaactgcataaactgaactaatagaac

Downstream sequence

actgaagtaatctttttaactttttgcttaaaatattcctaatccttttatttttcaaagtcaaaaaaagttttaagctatcaacaattaagtatacgcc