Basic Information
VIS ID
TVIS30010400
Fusion event
HIV-ERVK13-1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2719406/2669405 (Hg38)
End
2719406/2669405 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ERVK13-1
Nearest miRNA
hsa-mir-1225/Upstream/137400; hsa-mir-11401/Downstream/815976;
Nearest TSS
ENST00000527434/Upstream/24191; ENST00000569689/Downstream/13070;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/34133, chr16-CpG: 98/Downstream/3517
Upstream sequence
aacacctccttctttaagaagagtttttataaaatttaaataagccaaatactttgtactggcctgtcccatggtgtccccagaaaactgagtgctcaag
Downstream sequence
cttaccaccaagtttatagactgcaatcctcaggaatctctcgttgaactcctccgctgatcccgcactcagggtgcaacttcacacagcgagggagagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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