Basic Information
VIS ID
TVIS30010403
Fusion event
HIV-ZNF263 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3348066/3298066 (Hg38)
End
3348066/3298066 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF263
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-1225/Upstream/766061; hsa-mir-11401/Downstream/187315;
Nearest TSS
ENST00000527434/Upstream/7663; ENST00000612186/Downstream/5806;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2461, chr16-CpG: 111/Downstream/6954
Nearby gene
TIGD7(No orient, 742)
Upstream sequence
gtgcattgggagaagtactttcaaaataatggtgggaatgtgaaagcaatttaacagcgtgtatcgcagctttttcaaaagttcattctatttgacctgg
Downstream sequence
tagttcaactGATACGTTACATCCCCTGGTGGAGTATTAAAAAACCATCAAATGTGAGGTTAAGAGATTTTAATGACCTAAGGGAAACTCTCAGAAatag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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