VISDB Viral Integration Site DataBase

VIS ID

TVIS30010410

Fusion event

HIV-CREBBP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

3888317/3838316 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-324-3p ; hsa-mir-1301-3p ; hsa-mir-935 ; hsa-mir-769-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-let-7e-5p ; hsa-mir-543 ; hsa-mir-4635 ; hsa-mir-218-5p ; hsa-mir-33a-3p ; hsa-mir-1264 ; hsa-mir-6507-3p ; hsa-mir-4684-5p ; hsa-mir-3143 ; hsa-mir-601 ; hsa-mir-4765 ; hsa-mir-942-5p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-325 ; hsa-mir-628-3p ; hsa-mir-6729-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-5586-3p ; hsa-mir-802 ; hsa-mir-2681-5p ; hsa-mir-302c-5p ; hsa-mir-5681b ; hsa-mir-571 ; hsa-mir-5680 ; hsa-mir-6512-5p ; hsa-mir-338-5p ; hsa-mir-4517 ; hsa-mir-1252-3p ; hsa-mir-219a-1-3p ; hsa-mir-4268 ; hsa-mir-4641 ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-4328

Nearest miRNA

hsa-mir-1225/Upstream/352847; hsa-mir-11401/Downstream/833002;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/106899, chr16-CpG: 208/Downstream/41166

Nearest cancer related gene

CREBBP(TSG, No orient, 0)

Upstream sequence

agcattgtggcaccgtgttacaactgcccaagtatgcattacagtaacatgatgtacagatttatagtccaggagcaacagggtacactatatagcctag

Downstream sequence

gtgtgtaacaggctatgccatctaggtttgcataactactctatgatgttcctagcataacataatcacttaatgatgcatttcacccccatcaagtgac