VISDB Viral Integration Site DataBase

VIS ID

TVIS30010416

Fusion event

HIV-C16orf72 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p13.2

Reference genome

Start

End

9198558/9104701 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-92a-2-5p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-498 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4455 ; hsa-mir-6748-5p ; hsa-mir-6769a-5p ; hsa-mir-6838-5p ; hsa-mir-6769b-5p ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-4689 ; hsa-mir-6858-5p ; hsa-mir-450b-5p ; hsa-mir-543 ; hsa-mir-377-3p ; hsa-mir-1273e ; hsa-mir-4649-3p ; hsa-mir-1827 ; hsa-mir-302f ; hsa-mir-3119 ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-3121-5p ; hsa-mir-6513-3p ; hsa-mir-4781-3p ; hsa-mir-609 ; hsa-mir-6772-5p ; hsa-mir-6792-3p ; hsa-mir-651-5p ; hsa-mir-4691-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-8063 ; hsa-mir-4698 ; hsa-mir-501-5p ; hsa-mir-4668-3p ; hsa-mir-500a-5p ; hsa-mir-6749-3p ; hsa-mir-4326 ; hsa-mir-124-5p ; hsa-mir-511-3p

Nearest miRNA

hsa-mir-1225/Upstream/3472135; hsa-mir-11401/Downstream/2201739;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/11869, chr16-CpG: 282/Downstream/1075385

Upstream sequence

CCCTTGATAGTGTTTAGGACAATTAAAAACAAAAACATGAATTGCAGGAAAGTTCAGGTTGTGTGGATGCAGTACTTTAAGACTGCACACTGTTCCTGAC

Downstream sequence

ACAGTGGAATAGTTAGGCTGTCAGAACTTTGGAAGCTCAGGCAAAAATGGGATTGATCTGTTTATGCTGAATTAGAGAGTTTCACATCTTTCCCCCTAAA