Basic Information
VIS ID
TVIS30010426
Fusion event
HIV-CCP110 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
19537982/19526660 (Hg38)
End
19537982/19526660 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCP110
miRNAs that regulate target gene
hsa-mir-129-2-3p ; hsa-mir-193b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-3679-3p ; hsa-mir-6734-3p ; hsa-mir-3667-3p ; hsa-mir-500a-5p ; hsa-mir-129-5p ; hsa-mir-3194-3p ; hsa-mir-3672 ; hsa-mir-431-5p ; hsa-mir-4524a-3p ; hsa-mir-4711-3p ; hsa-mir-5691 ; hsa-mir-6733-3p ; hsa-mir-6805-3p ; hsa-mir-6864-3p ; hsa-mir-8055
Nearest miRNA
hsa-mir-1225/Upstream/1032084; hsa-mir-11401/Downstream/1979389;
Nearest TSS
ENST00000527434/Upstream/2699; ENST00000561888/Downstream/1176;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2347, chr16-CpG: 63/Downstream/28504
Upstream sequence
TTGAACACAAATAATTACAATTGATTGAATAGTAGGAAGAAGTTTTGTTATTGATTAAACTATTTAGAAAAAATAGCATTATATCTTATTTTTTTATAAC
Downstream sequence
CTGATTATAATTTTGACTATTTTTTTTTTCCCATTTCTCATTGCACTATAATTTGTCCCTGATACTTTGGTGTACTGAATTTTTAAGTACTTTGAGGCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate