Basic Information
VIS ID
TVIS30010427
Fusion event
HIV-REXO5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
20828166/20816844 (Hg38)
End
20828166/20816844 (Hg38)
Orient
-
Location type
Intronic
Target gene
REXO5
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-1225/Upstream/2322268; hsa-mir-11401/Downstream/689205;
Nearest TSS
ENST00000527434/Upstream/9687; ENST00000563045/Downstream/4193;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9652, chr16-CpG: 87/Downstream/83400
Upstream sequence
CTAAGGATACCTGGGTATCACTGATGTTGGACTCTTATGAATTACTGTGAATAATTTCTAAACTGTCACTGGGTCTTTGTACCCACCAGTGTACAGGTGG
Downstream sequence
GAAGGAAGATCTTGCCTTTGACTAATATAAGGGATACCTGCTGATACTACTCACAGTGAAGAATAGGCAGGAGGTTTAGATACTAGCCAGCTGAAAGATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate