VISDB Viral Integration Site DataBase

VIS ID

TVIS30010428

Fusion event

HIV-EEF2K integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.2

Reference genome

Start

End

22256723/22245402 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-877-3p ; hsa-mir-16-5p ; hsa-mir-142-3p ; hsa-mir-603 ; hsa-mir-122-5p ; hsa-mir-1273g-3p ; hsa-mir-1273h-5p ; hsa-mir-1304-3p ; hsa-mir-1307-3p ; hsa-mir-143-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-30b-3p ; hsa-mir-3135b ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3652 ; hsa-mir-3664-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-424-3p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4284 ; hsa-mir-4293 ; hsa-mir-4430 ; hsa-mir-455-3p ; hsa-mir-4638-5p ; hsa-mir-4639-3p ; hsa-mir-4728-5p ; hsa-mir-4793-3p ; hsa-mir-490-3p ; hsa-mir-495-3p ; hsa-mir-504-3p ; hsa-mir-508-5p ; hsa-mir-5190 ; hsa-mir-5688 ; hsa-mir-5698 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-6720-5p ; hsa-mir-6741-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6794-3p ; hsa-mir-6799-5p ; hsa-mir-6807-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-7851-3p

Nearest miRNA

hsa-mir-1225/Upstream/739267; hsa-mir-11401/Downstream/1957714;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/38633, chr16-CpG: 84/Downstream/51868

Upstream sequence

gaaacattttccaatatattgattgaagaaagtccatttataagtagacccacgcacttcaaacccatgtcattcaagcatcaactATACTTGCCCTGGG

Downstream sequence

CCGGTGCAAACTGTGCAGCTCTGGAGAGCTTTCCTCCCTCTGAGCCTAGGGGAGGTTAACCTGCCAGGCCTCTGCTTGTTTTTCCCGGTGGAGGCATCAG