Basic Information
VIS ID
TVIS30010439
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
35008243/35773872 (Hg38)
End
35008243/35773872 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1225/Upstream/1610199; hsa-mir-11401/Downstream/14518744;
Nearest TSS
ENST00000527434/Upstream/25515; ENST00000569239/Downstream/13015;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/198369, chr16-CpG: 158/Downstream/327279
Upstream sequence
gagatagcttgtttctagtttttattgtgggatattcggcctcaatgggttctgaaatgtcatatcatatattctactaaaagagtgttgctaacctgct
Downstream sequence
gaaccaaaacaaagttttaactctgtgagagaatccatacatccagaatatttttagattgcttgtttgtagtttttatcatgagatattccatttttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate