Basic Information
VIS ID
TVIS30010454
Fusion event
HIV-LOC107984842 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
88856274/88789866 (Hg38)
End
88856274/88789866 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984842
Nearest miRNA
hsa-mir-11401/Upstream/73529;
Nearest TSS
ENST00000527434/Upstream/4646; ENST00000562747/Downstream/13347;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/4000, chr16-CpG: 113/Downstream/13506
Nearby gene
PIEZO1(No orient, 4646)
Upstream sequence
gggctgggggacgtggagggaagggagccaggcacagaaggaagacaccatgtggctctgtgtacgtgaaatgtctatggagacagacagcagagggtgg
Downstream sequence
ttaccaggccagagggggaagtgggcagctgttgtttaacagtggcagagtttctctttggggtgataaaaaggttctggaaatagtagtgttgacacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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