Basic Information
VIS ID
TVIS30010455
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
89044559/88978151 (Hg38)
End
89044559/88978151 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/261814;
Nearest TSS
ENST00000527434/Upstream/947; ENST00000562040/Downstream/5881;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10266, chr16-CpG: 54/Downstream/24035
Nearby gene
CBFA2T3(No orient, 1055)
Nearest cancer related gene
CBFA2T3(TSG, No orient, 1055)
Upstream sequence
CTGGAGGTTTCCCGGCCTCAGACAGGCCAGAGGTGTGGAGCCCGCAGACCCAGGGCCGGCTCACGGGCATCTGTGCTATtttgatttgatttgatttgaG
Downstream sequence
TTTTAGGTCACGTTTGCACGCAGTTAATAATTCAAGCCGTGCAGGAGTAAAAGCCGACTCCTTCCCCGCAGGGTCTCCAGGTGTCCCGGGTCTCCCTGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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