Basic Information
VIS ID
TVIS30010475
Fusion event
HIV-DLG4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7105307/7201988 (Hg38)
End
7105307/7201988 (Hg38)
Orient
-
Location type
Intronic
Target gene
DLG4
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-10a-5p ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-449b-3p
Nearest miRNA
hsa-mir-1253/Upstream/183966; hsa-mir-10226/Downstream/21309;
Nearest TSS
ENST00000595228/Upstream/8431; ENST00000578269/Downstream/2419;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/27419, chr17-CpG: 24/Downstream/2997
Upstream sequence
aaattaaaattaaattaaaaaataagttaatggacacactgctaaaattgtatcattataaaatgtttgttactggttcctgataactagtcttcaccat
Downstream sequence
cttaaggaaaatttctgtgttcctagtttactaaaagctttcatccaaaagagatggtgaatttcaccaaatgcctttttcacgtctatttaagataatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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