VISDB Viral Integration Site DataBase

VIS ID

TVIS30010480

Fusion event

HIV-MAP2K4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p12

Reference genome

Start

End

11998637/12095320 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-15b-5p ; hsa-mir-26b-5p ; hsa-mir-25-3p ; hsa-mir-145-5p ; hsa-mir-188-5p ; hsa-mir-27a-3p ; hsa-mir-92a-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-542-3p ; hsa-mir-4261 ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4433a-3p ; hsa-mir-3688-3p ; hsa-mir-6818-3p ; hsa-mir-7855-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-3185 ; hsa-mir-3121-5p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-3614-5p ; hsa-mir-10a-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-32-5p

Nearest miRNA

hsa-mir-1253/Upstream/13324; hsa-mir-10226/Downstream/821948;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/73766, chr17-CpG: 70/Downstream/570030

Nearest cancer related gene

MAP2K4(TSG, No orient, 0)

Upstream sequence

TTATTCATATGAAACTGTTAAAACTCATTATCATTTTCTTTATATTTGCATGTGGGGGTTAATTTTTACTGCCTAAGAACTTTGTTGCATAACTCCCAAC

Downstream sequence

ATTATTAGTAAATGCTCATGGTTAAATTGCCCTGTCTCCTTTAAAGGATTTCTAAGTGCTGTTTGTTAAACTTTCTGTGATTAAAGTAATTCTTGTGAAG