Basic Information
VIS ID
TVIS30010481
Fusion event
HIV-NCOR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
15985662/16082348 (Hg38)
End
15985662/16082348 (Hg38)
Orient
+
Location type
Intronic
Target gene
NCOR1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-34a-3p
Nearest miRNA
hsa-mir-1253/Upstream/830652; hsa-mir-10226/Downstream/199666;
Nearest TSS
ENST00000595228/Upstream/1835; ENST00000463810/Downstream/9570;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/81974, chr17-CpG: 118/Downstream/132613
Upstream sequence
aatgtccagtttttgaccaaaaattataagatacgcaaagaaacatgaaagtgtgagccatacatatgaaacagagcagggaacagaaaatattcctgag
Downstream sequence
ctttgggctcaggaataaagactttaaatcagctattataaatgtattccaagaactaaaataaaccatgtctaaattaaaggaggccaggtgcagtggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate