Basic Information
VIS ID
TVIS30010484
Fusion event
HIV-NSRP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
28505629/30178611 (Hg38)
End
28505629/30178611 (Hg38)
Orient
+
Location type
Intronic
Target gene
NSRP1
miRNAs that regulate target gene
hsa-mir-324-3p ; hsa-mir-186-5p
Nearest miRNA
hsa-mir-1180/Upstream/61439; hsa-mir-10226/Downstream/915739;
Nearest TSS
ENST00000595228/Upstream/33821; ENST00000581633/Downstream/25071;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/61618, chr17-CpG: 74/Downstream/56758
Upstream sequence
TTTTATTACCCTCTCATTTTTTCATTTCTTCCTAGCTGGTAACTGAATCATCTGCCTGCACCTATCATGATTTTATTTTCAGTGAGAAAAAAATTTGGGA
Downstream sequence
GGGGTAAAAACTGAAATAAGTTCAGATTTTCTTTCTATCAACTCTTGTTCTTTCACAAGCACAGGCTGATTTTTAAGGGCATTTGCATCTGACAGTTATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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