Basic Information
VIS ID
TVIS30010485
Fusion event
HIV-LRRC37BP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
28943605/30616587 (Hg38)
End
28943605/30616587 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LRRC37BP1
Nearest miRNA
hsa-mir-1180/Upstream/499415; hsa-mir-10226/Downstream/477763;
Nearest TSS
ENST00000595228/Upstream/51011; ENST00000581019/Downstream/110977;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/15151, chr17-CpG: 30/Downstream/89404
Upstream sequence
GATAAACATTACTTGAGGTCCTAAATGCAGAAGGGAAAAAGCAACTTTTGTCAGATGCCTACTTCACTTTCATTCATCTCTAATATTTTGGATGGGGAAT
Downstream sequence
CATCCAAAGCTTCTGAGTGCATGAAGGTCAAGTGTGCCAGTGTGCAGCTGGGCTTCTTTTCCAGAATTAAAAGTATTTTGGGTGGTGCTGAAGGTCAGCG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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