VISDB Viral Integration Site DataBase

VIS ID

TVIS30010489

Fusion event

HIV-PSMD11 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

30796764/32469746 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-1236-3p ; hsa-mir-940 ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-744-5p ; hsa-mir-324-5p ; hsa-mir-320a ; hsa-mir-10b-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-142-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-8085 ; hsa-mir-6878-5p ; hsa-mir-6731-5p ; hsa-mir-765 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6760-5p ; hsa-mir-4433b-3p ; hsa-mir-6888-5p ; hsa-mir-6873-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-1253 ; hsa-mir-4768-3p ; hsa-mir-4688 ; hsa-mir-6743-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-6515-5p ; hsa-mir-4728-5p ; hsa-mir-766-5p ; hsa-mir-605-3p ; hsa-mir-4308 ; hsa-mir-4254 ; hsa-mir-331-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-744-3p ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-449b-3p

Nearest miRNA

hsa-mir-1180/Upstream/119544; hsa-mir-10226/Downstream/4563999;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/24627, chr17-CpG: 225/Downstream/16413

Upstream sequence

TGTGAGGCTGGGAAGCCATGGATTGGCAGGTGGAATACTTTCTTTTGTATTCAGCAGTTTTTTTTTTTACTGGAGGCGTCATTATTGAAGGAATGTTGGA

Downstream sequence

ATTGGAAGCAGAAGACGAGTTTAAGTGCTTGTGTTACCTctcatctgtaaaagataatgcctactcgactcatctgtcagggatgtactgatctaggatc