VISDB Viral Integration Site DataBase

VIS ID

TVIS30010493

Fusion event

HIV-DDX52 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

35982189/37622144 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-6894-5p ; hsa-mir-4722-5p ; hsa-mir-4459 ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-574-5p ; hsa-mir-1305 ; hsa-mir-498 ; hsa-mir-190a-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-8066 ; hsa-mir-369-3p ; hsa-mir-1277-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-4252 ; hsa-mir-4432 ; hsa-mir-451b ; hsa-mir-4696 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-5694 ; hsa-mir-612 ; hsa-mir-6501-3p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1180/Upstream/7105; hsa-mir-10226/Downstream/1080118;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/12435, chr17-CpG: 29/Downstream/21077

Upstream sequence

caTTAACTCATTATTTATCCTAACTCTGGTGCTCTCCCCAAGCTTAGTCCTTGGTTCTCAGTTCTTTCAATATAATCTTTATTTTACTGAGTTGAATCTC

Downstream sequence

TACTACTATCTCTAAGTAAACATTTTTTTTTTTACTACATCTGATGTCTGTGAATCTAAACAAATTATTTTTACATTTACACTATCAAACCCTTACTCTC