VISDB Viral Integration Site DataBase

VIS ID

TVIS30010494

Fusion event

HIV-SOCS7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

36538658/38382833 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-145-5p ; hsa-mir-615-3p ; hsa-mir-17-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-186-3p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-519a-3p ; hsa-mir-2052 ; hsa-mir-3149 ; hsa-mir-4715-3p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-6832-5p ; hsa-mir-4735-5p ; hsa-mir-6872-3p ; hsa-mir-590-3p ; hsa-mir-136-5p ; hsa-mir-6083 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-3074-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-448 ; hsa-mir-1224-5p ; hsa-mir-8064 ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-1197 ; hsa-mir-4643 ; hsa-mir-8485 ; hsa-mir-199a-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1247-3p ; hsa-mir-1273h-3p ; hsa-mir-1292-5p ; hsa-mir-17-3p ; hsa-mir-185-5p ; hsa-mir-1909-3p ; hsa-mir-191-5p ; hsa-mir-214-5p ; hsa-mir-2355-5p ; hsa-mir-2467-3p ; hsa-mir-3153 ; hsa-mir-3202 ; hsa-mir-328-5p ; hsa-mir-3616-3p ; hsa-mir-3665 ; hsa-mir-3678-3p ; hsa-mir-3911 ; hsa-mir-3927-3p ; hsa-mir-3934-5p ; hsa-mir-4261 ; hsa-mir-4306 ; hsa-mir-432-5p ; hsa-mir-4418 ; hsa-mir-4421 ; hsa-mir-4436b-3p ; hsa-mir-4443 ; hsa-mir-4446-3p ; hsa-mir-4458 ; hsa-mir-4476 ; hsa-mir-4481 ; hsa-mir-4489 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4500 ; hsa-mir-4524a-3p ; hsa-mir-4532 ; hsa-mir-4632-5p ; hsa-mir-4644 ; hsa-mir-4648 ; hsa-mir-4684-3p ; hsa-mir-4690-5p ; hsa-mir-4694-5p ; hsa-mir-4738-5p ; hsa-mir-4745-5p ; hsa-mir-4779 ; hsa-mir-5001-5p ; hsa-mir-5091 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-5192 ; hsa-mir-5580-5p ; hsa-mir-5584-5p ; hsa-mir-5681a ; hsa-mir-5699-3p ; hsa-mir-593-3p ; hsa-mir-6070 ; hsa-mir-6132 ; hsa-mir-6165 ; hsa-mir-640 ; hsa-mir-6510-5p ; hsa-mir-6515-5p ; hsa-mir-664b-5p ; hsa-mir-6720-3p ; hsa-mir-6722-3p ; hsa-mir-6732-5p ; hsa-mir-6733-5p ; hsa-mir-6735-5p ; hsa-mir-6739-5p ; hsa-mir-6750-5p ; hsa-mir-6799-5p ; hsa-mir-6815-3p ; hsa-mir-6818-3p ; hsa-mir-6822-5p ; hsa-mir-6831-5p ; hsa-mir-6835-5p ; hsa-mir-6836-5p ; hsa-mir-6846-5p ; hsa-mir-6847-5p ; hsa-mir-6848-5p ; hsa-mir-6871-5p ; hsa-mir-6873-5p ; hsa-mir-6876-5p ; hsa-mir-6879-5p ; hsa-mir-6885-5p ; hsa-mir-6888-5p ; hsa-mir-6894-5p ; hsa-mir-6895-3p ; hsa-mir-7154-3p ; hsa-mir-7515 ; hsa-mir-762 ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7843-5p ; hsa-mir-7847-3p ; hsa-mir-92b-5p ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-1180/Upstream/767794; hsa-mir-10226/Downstream/319429;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/29777, chr17-CpG: 49/Downstream/36279

Upstream sequence

gcctcaacctcccaaagtgctgagattacaggcgtgagccaccacgcttggcGGAATTGGACAGCTCTTTAAGGAAATTGGTTACTTCCTCTTTTGTAAC

Downstream sequence

CCTTGTTAAGTTTATAATTACTTGTTCAGTGACATGTCTTCCCTGTTTACcagggtttctcagctctgcattattgacattttaggctggacagtttttt