Basic Information
VIS ID
TVIS30010495
Fusion event
HIV-ARHGAP23 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
36627099/38470858 (Hg38)
End
36627099/38470858 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARHGAP23
miRNAs that regulate target gene
hsa-mir-1274b
Nearest miRNA
hsa-mir-1180/Upstream/855819; hsa-mir-10226/Downstream/231404;
Nearest TSS
ENST00000595228/Upstream/1278; ENST00000616909/Downstream/1081;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/5693, chr17-CpG: 19/Downstream/6854
Upstream sequence
actcctgacgtcaggtgatccacccacctcggcctcccaaagtgttgggattacaggcgtgagccaccgcacctggcctcaaatgattttcttgcttcgg
Downstream sequence
tctcccaaaatgctgggattacaggcataagccatcacacctggACATATTTTTGTTTTTAAAATCATATATATATTTTTCATGCATGAtttttctttct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate