Basic Information
VIS ID
TVIS30010514
Fusion event
HIV-BRIP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
59852506/61775145 (Hg38)
End
59852506/61775145 (Hg38)
Orient
-
Location type
Intronic
Target gene
BRIP1
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-378a-5p ; hsa-mir-182-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-3689d ; hsa-mir-3929 ; hsa-mir-4254 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-490-3p ; hsa-mir-493-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-619-3p ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-6516-5p ; hsa-mir-6808-5p ; hsa-mir-6851-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7854-3p ; hsa-mir-940
Nearest miRNA
hsa-mir-10226/Upstream/1732040; hsa-mir-1250/Downstream/1169070;
Nearest TSS
ENST00000595228/Upstream/183943; ENST00000635817/Downstream/1335;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/312672, chr17-CpG: 21/Downstream/88319
Upstream sequence
TTCCAATTTCCCGGAAGATATTTGTCTCCATATTTAAGAATTAAAAGTCCTAAAAATTTTATTAGGTAAGACCAACTCCCTACAAGTTTTATTGTATGAC
Downstream sequence
TTAGTATCAAGCTTAATTACTAGTTTTCCTAAATATAACTGTTTGGTGTAGATGTTCACACTGGAATAAATCTTGTTTTCCATTAAGAATTTTAAAAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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