Basic Information
VIS ID
TVIS30010515
Fusion event
HIV-MIR548W integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
61175668/63098307 (Hg38)
End
61175668/63098307 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR548W
Nearest miRNA
hsa-mir-10226/Upstream/153995; hsa-mir-1250/Downstream/1402467;
Nearest TSS
ENST00000595228/Upstream/24348; ENST00000581424/Downstream/32640;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/131260, chr17-CpG: 19/Downstream/335985
Upstream sequence
ttaccttcctccacaaagatttatgtttgtttttagtaggcactgtcaatgcaaaactgtcttaatttaattttatgggaaatatttagagctgagcttt
Downstream sequence
agtccctgtgagaaccagtcaagtttcagttcctactttctcctagagtatagttctttgggcttttaacaaaagtgttggagttttgctatctccactt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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