Basic Information
VIS ID
TVIS30010520
Fusion event
HIV-CEP112 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
64022939/66026821 (Hg38)
End
64022939/66026821 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP112
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-10226/Upstream/1204719; hsa-mir-1250/Downstream/760251;
Nearest TSS
ENST00000595228/Upstream/85255; ENST00000583775/Downstream/155594;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/465008, chr17-CpG: 84/Downstream/164773
Upstream sequence
atcctcctatgtactttaagtcatctcataataacttatatagtacctaatccaatgcttacacatcacttcattcacatggattcaacatagtacttga
Downstream sequence
cacatggcaaatccaagttatagttttggacctttgtgtaattttttttcctgaatatttttgatccatgtttgactgaatccacagatgtgaaatccat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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