VISDB Viral Integration Site DataBase

VIS ID

TVIS30010521

Fusion event

HIV-UNK integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

73800053/75803972 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-760 ; hsa-mir-186-5p ; hsa-mir-17-3p ; hsa-let-7a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-636 ; hsa-mir-1264 ; hsa-mir-302e ; hsa-mir-548t-5p ; hsa-mir-3184-3p ; hsa-mir-548az-5p ; hsa-mir-3151-5p ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-5001-5p ; hsa-mir-762 ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-4726-3p ; hsa-mir-3934-5p ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-4459 ; hsa-mir-1296-3p ; hsa-mir-4433b-3p ; hsa-mir-6795-5p ; hsa-mir-6887-5p ; hsa-mir-625-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-4467 ; hsa-mir-1908-5p ; hsa-mir-4533 ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-3169 ; hsa-mir-328-3p ; hsa-mir-6851-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4778-3p ; hsa-mir-1277-5p ; hsa-mir-5007-3p ; hsa-mir-190a-3p ; hsa-mir-466 ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-5011-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-149-3p ; hsa-mir-4728-5p ; hsa-mir-4740-5p ; hsa-mir-6784-5p ; hsa-mir-6785-5p ; hsa-mir-6825-5p ; hsa-mir-6857-3p ; hsa-mir-6883-5p

Nearest miRNA

hsa-mir-10226/Upstream/19365; hsa-mir-1250/Downstream/294047;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/18745, chr17-CpG: 78/Downstream/51207

Upstream sequence

ttggaaattagcttttgctgcagactaggtaatgtttgttaatgaattcaacctaaaactccaaagtaaaacagtgcttatgcaaaccctatgcttcagg

Downstream sequence

gaagtcatgttgatgacagcaaatgtttaaatcatatgtcatgttaaactgccttgtatacttcctgtgctggcaaaagtgaaaacaaaggcaagctctc