Basic Information
VIS ID
TVIS30010524
Fusion event
HIV-MFSD11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74782439/76786357 (Hg38)
End
74782439/76786357 (Hg38)
Orient
+
Location type
Intronic
Target gene
MFSD11
miRNAs that regulate target gene
hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-371a-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6778-3p
Nearest miRNA
hsa-mir-10226/Upstream/49809; hsa-mir-1250/Downstream/303060;
Nearest TSS
ENST00000595228/Upstream/13260; ENST00000585863/Downstream/12687;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/48217, chr17-CpG: 254/Downstream/81731
Nearby gene
MFSD11(No orient, 7103)
Upstream sequence
cctcagcctcccaagtagctgggattacagacatgcaccaccatgccctgctaatttttgtatttttagtagagacagggtttcgccatgttggccaggc
Downstream sequence
tggtctcgaactgacctcaagtgatctgcccgcctcggcctcccaaagtgctgggattacaggcataagccaccacacctggcTGaggaccacctcttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate