Basic Information
VIS ID
TVIS30010544
Fusion event
HIV-LPIN2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
2951707/2951709 (Hg38)
End
2951707/2951709 (Hg38)
Orient
+
Location type
Intronic
Target gene
LPIN2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-769-5p
Nearest miRNA
hsa-mir-8078/Upstream/2839370; hsa-mir-1-2/Downstream/933644;
Nearest TSS
ENST00000575820/Upstream/3368; ENST00000582591/Downstream/15309;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/38400, chr18-CpG: 105/Downstream/60840
Upstream sequence
GTCAGCATGGAACACCCCAAAGCCATAATTAAAGCTAAGCCTATTAAATTCTTCACAAAGCAAAGATCAAAGCAGCAACAAAAATCTCAGGAGGTGTTAC
Downstream sequence
AAAGGACTCTCTCAAGAACTCACACAGAACATTCAGAACAGGAAAAAGCAGAAGGCAGAGATTAAGGACACTACATCAGACAAAGGGCAGCAGGACAGGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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