VISDB Viral Integration Site DataBase

VIS ID

TVIS30010554

Fusion event

HIV-PIAS2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

44420322/46840359 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-4720-3p ; hsa-mir-6507-5p ; hsa-mir-6126 ; hsa-mir-3140-3p ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-497-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-4713-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6742-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-1281 ; hsa-mir-1343-3p ; hsa-mir-4485-5p ; hsa-mir-660-3p ; hsa-mir-6783-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-129-5p ; hsa-mir-1303 ; hsa-mir-1304-3p ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-215-3p ; hsa-mir-3664-5p ; hsa-mir-4639-3p ; hsa-mir-5007-5p ; hsa-mir-6758-5p ; hsa-mir-6773-3p ; hsa-mir-6794-3p ; hsa-mir-6843-3p ; hsa-mir-6848-3p ; hsa-mir-6856-5p ; hsa-mir-6879-3p

Nearest miRNA

hsa-mir-1-2/Upstream/1870193; hsa-mir-122/Downstream/540137;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/82222, chr18-CpG: 126/Downstream/76588

Upstream sequence

ttttaaaagacaagagtacacaagcacacattccattagccatcagagcaatgacatcatcatcatctattgggtaacccacgttaaacatcactttatg

Downstream sequence

ctcctaagagaaaaagaacacaaaatgccaaaattgtgtgtccatattattataaaaagttttaactttgtagttcttttcaaagagtgtcagggacctt