VISDB Viral Integration Site DataBase

VIS ID

TVIS30010555

Fusion event

HIV-SMAD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

45405521/47879150 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-652-3p ; hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-624-3p ; hsa-mir-148a-3p ; hsa-mir-181a-5p ; hsa-mir-188-5p ; hsa-let-7g-5p ; hsa-mir-146a-5p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-192-3p ; hsa-mir-6501-5p ; hsa-mir-3613-3p ; hsa-mir-495-5p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-1228-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-503-5p ; hsa-mir-642a-5p ; hsa-mir-196a-3p ; hsa-mir-4469 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-106a-3p ; hsa-mir-937-5p ; hsa-mir-505-3p ; hsa-mir-5702 ; hsa-mir-203a-3p ; hsa-mir-1324 ; hsa-mir-5680 ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-374a-3p ; hsa-mir-5089-3p ; hsa-mir-361-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-4502 ; hsa-mir-2115-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-323a-3p ; hsa-mir-128-3p ; hsa-mir-425-5p ; hsa-mir-486-5p ; hsa-mir-206 ; hsa-mir-503-3p ; hsa-mir-15b-5p ; hsa-mir-205-5p ; hsa-mir-125a-5p ; hsa-mir-145-5p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-let-7f-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p ; hsa-mir-1266-3p ; hsa-mir-1267 ; hsa-mir-300 ; hsa-mir-381-3p ; hsa-mir-4666a-3p ; hsa-mir-4789-5p ; hsa-mir-7152-5p ; hsa-mir-944 ; hsa-mir-98-3p

Nearest miRNA

hsa-mir-1-2/Upstream/498585; hsa-mir-122/Downstream/791450;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/614843, chr18-CpG: 186/Downstream/50963

Nearest cancer related gene

SMAD2(TSG, No orient, 0)

Upstream sequence

taggtggaggctgcagtgagactgcaccactgcactcactccatcttgaatgacagagctagaccctgtctcagagagaaaaataaaaGCTGCAGATAAC

Downstream sequence

ACAAATctagacacttaagaatgcacataactagagttcgctgttctttttttctttaggttaaatttacacagcatgaaacacacatcttaatggtacc