VISDB Viral Integration Site DataBase

VIS ID

TVIS30010592

Fusion event

HIV-ZNF799 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

12506993/12396179 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-6516-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6134 ; hsa-mir-1247-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-6800-3p ; hsa-mir-7641 ; hsa-mir-3622b-5p ; hsa-mir-7856-5p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4305 ; hsa-mir-4461 ; hsa-mir-4678 ; hsa-mir-5700 ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-1298-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-892c-5p ; hsa-mir-4676-3p ; hsa-mir-892c-3p ; hsa-mir-452-5p

Nearest miRNA

hsa-mir-1181/Upstream/900557; hsa-let-7e/Downstream/307422;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/30621, chr19-CpG: 58/Downstream/4615

Upstream sequence

gaatccaattttcagaattaccccattataacattgagatgtctacttttcaacacaaaattatgaagaatacagaaaaacatgaaaatatggttcatca

Downstream sequence

attggaaaaaatataattgagataagccatctctgagaaacctcagacactgcactcactgaataaaaacgttaaaacaactatcttaaatatgttcaat