VISDB Viral Integration Site DataBase

VIS ID

TVIS30010593

Fusion event

HIV-ZNF490 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

12691975/12581161 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-140-3p ; hsa-mir-128-3p ; hsa-mir-148a-3p ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-6499-3p ; hsa-mir-3612 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-4756-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-1273e ; hsa-mir-4497 ; hsa-mir-25-5p ; hsa-mir-6820-5p ; hsa-mir-658 ; hsa-mir-4722-5p ; hsa-mir-6087 ; hsa-mir-219b-3p ; hsa-mir-4768-3p ; hsa-mir-4459 ; hsa-mir-302f ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-298 ; hsa-mir-4257 ; hsa-mir-655-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-887-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-103a-2-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-6722-5p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-5p ; hsa-mir-383-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6509-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-1288-5p ; hsa-mir-3160-3p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3672 ; hsa-mir-4327 ; hsa-mir-4433a-3p ; hsa-mir-4487 ; hsa-mir-4514 ; hsa-mir-4649-3p ; hsa-mir-4692 ; hsa-mir-4695-5p ; hsa-mir-4786-5p ; hsa-mir-544b ; hsa-mir-558 ; hsa-mir-6089 ; hsa-mir-665 ; hsa-mir-6765-3p ; hsa-mir-6808-5p ; hsa-mir-6840-3p ; hsa-mir-6864-3p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7162-3p ; hsa-mir-769-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1181/Upstream/1085539; hsa-let-7e/Downstream/122440;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/25293, chr19-CpG: 34/Downstream/15721

Upstream sequence

TCCCTACATACAAAAGGTTTCTCTCCAGTATGAGTTTTCTCATGACTCCGTAAGTACGTGGGACAACTGAAGGCTTTCCCACATTGCTTACATTCATAAG

Downstream sequence

GTTTCTCTCCAGTGTGAGTCCTTTCGTGGGTTAGAAAAGGCTGGTAATATATAAAGGCTTTTCCACACTGTTTACATTTGTAGGGTTTCTCTCCAGTGTG