Basic Information
VIS ID
TVIS30010601
Fusion event
HIV-ZNF430 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
21219430/21036624 (Hg38)
End
21219430/21036624 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF430
miRNAs that regulate target gene
hsa-mir-342-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-8057 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-29b-1-5p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-1237-3p ; hsa-mir-6890-3p ; hsa-mir-640 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p
Nearest miRNA
hsa-mir-10395/Upstream/637270; hsa-let-7e/Downstream/14086076;
Nearest TSS
ENST00000633603/Upstream/15907; ENST00000597922/Downstream/21181;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/984326, chr19-CpG: 19/Downstream/45734
Upstream sequence
taggtgtaccttttagggccagacatggtggtggctcacatctgtaatccaggattatttgagctcaaaagtttgagaccaacctgggaaacatatggag
Downstream sequence
agtccctctctacaaaatgttttttaaaaatagccaggcatagtgttgtgcatctgtggttcaggctacttgcaagactgaggtgggagggttacttgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate