VISDB Viral Integration Site DataBase

VIS ID

TVIS30010602

Fusion event

HIV-ZNF431 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

21371925/21189122 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-2-3p ; hsa-mir-195-3p ; hsa-mir-155-5p ; hsa-mir-941 ; hsa-mir-101-3p ; hsa-mir-3192-3p ; hsa-mir-510-3p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-298 ; hsa-mir-4649-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-5197-3p ; hsa-mir-4446-5p ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-526b-5p ; hsa-mir-642a-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-655-5p ; hsa-mir-6134 ; hsa-mir-4459 ; hsa-mir-4762-3p ; hsa-mir-3161 ; hsa-mir-582-5p ; hsa-mir-139-5p ; hsa-mir-618 ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-629-3p ; hsa-mir-183-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-3186-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4732-5p ; hsa-mir-6845-3p ; hsa-mir-6832-5p ; hsa-mir-3941 ; hsa-mir-5585-5p ; hsa-mir-6512-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-10a-3p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-4667-3p ; hsa-mir-6865-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6830-5p ; hsa-mir-3171 ; hsa-mir-7110-3p ; hsa-mir-216b-5p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-106a-3p ; hsa-mir-4634 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-517c-3p ; hsa-mir-517b-3p ; hsa-mir-517a-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3944-5p ; hsa-mir-4536-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-140-3p ; hsa-mir-22-3p ; hsa-mir-3064-3p ; hsa-mir-3160-3p ; hsa-mir-329-5p ; hsa-mir-4487 ; hsa-mir-556-5p ; hsa-mir-558 ; hsa-mir-5700 ; hsa-mir-577 ; hsa-mir-633 ; hsa-mir-1289 ; hsa-mir-3198 ; hsa-mir-3671 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4762-5p ; hsa-mir-4802-5p ; hsa-mir-551b-5p ; hsa-mir-607 ; hsa-mir-6514-5p ; hsa-mir-8076

Nearest miRNA

hsa-mir-10395/Upstream/789768; hsa-let-7e/Downstream/13933578;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/106495, chr19-CpG: 18/Downstream/274404

Nearby gene

ZNF431(No orient, 3120)

Upstream sequence

ATACTATTTAACCAAGATTATCACAAAGACACAGTATTTGACACATTGTTATTCTTCTATGTTTTATAAATAttttaatgtgacaggtagaatctgtact

Downstream sequence

ttttctgtagaacgtaatattttgaagtatatatatagttaaattattatttctaggtaattaataatttatctcacattggtcagacatgatggctcat