Basic Information
VIS ID
TVIS30010603
Fusion event
HIV-LOC100420587 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29120408/28629501 (Hg38)
End
29120408/28629501 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100420587
Nearest miRNA
hsa-mir-10395/Upstream/8230147; hsa-let-7e/Downstream/6493199;
Nearest TSS
ENST00000633603/Upstream/22813; ENST00000585883/Downstream/3227;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/719576, chr19-CpG: 67/Downstream/97593
Upstream sequence
aatactactaagagcaattaggtaagaaaaagaaataaatggcatccaaagaggagagaagaaagaaattgtttatgtttgctgatgatatgatcttgta
Downstream sequence
tatagaaaaccctaaacatgccaccaaaaaactgttaaaactaacaaattcagtgaagttgcaagatacaaaatctacatacaaaaatcagtagcaacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate